PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017025-PA
Common NameOsI_17190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 317aa    MW: 34278.2 Da    PI: 9.8496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017025-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-1393144155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  BGIOSGA017025-PA  93 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 144
                       79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1891168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1491148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-1491148No hitNo description
PROSITE profilePS5088815.23792143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1093144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1098149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MALDTLCSAG GDVLIYDTFN ASAAAAAAVV PPASFLFGNN NAGGAAGTET RVQVAAGAVP  60
EVDQLLKQAQ QPGRRKRRRR ARSCKSREDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP  120
ESYVHRGDQA SIVGGAIDFV KELEQLLQSL EAQKRTLLMQ PPPPPQQQRE PKCDAADSTS  180
AADQETPAAA AADGPPFARF FTYPQYVWCH NPAQDGGGGG GAAAENRAGV ADIEVSLVET  240
HASIRVMAAR RPGQLLKMVA GLQALRLTVL HLNVTALGSL ALYSISVKVR IHRSLLPKKF  300
LRFLAEIWPI VAFAFPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RRKRRRR
27478RKRRR
37481RKRRRRAR
493104RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637096.11e-156PREDICTED: transcription factor bHLH94
SwissprotQ9C7T46e-62BH096_ARATH; Transcription factor bHLH96
TrEMBLB8ATJ00.0B8ATJ0_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA017025-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.15e-44bHLH family protein